sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-732-731
X
>2VQF-A1358-A1357
X
>3OI1-B34-B33
X
>3U5F-61372-61371
X
>3OHZ-B34-B33
X
>3OHJ-B34-B33
X
>3OHK-B34-B33
X
>3R8N-A1379-A1378
X
>2J03-B34-B33
X
>2J01-B34-B33
X
</seq>
<hsp>
0 1:0.378733683745
0 2:0.562125403591
0 3:0.478095200388
0 4:0.563377649661
0 5:0.470866413624
0 6:0.473370230989
0 7:0.570049057878
0 8:0.215139468161
0 9:0.212547471454
1 2:0.798171076357
1 3:0.511516706785
1 4:0.799781575006
1 5:0.711809586257
1 6:0.709376369389
1 7:0.258100364624
1 8:0.312652567756
1 9:0.294956919974
2 3:0.544758970638
2 4:0.0234023309734
2 5:0.142283991415
2 6:0.149774693987
2 7:1.0
2 8:0.589265578839
2 9:0.601315003032
3 4:0.544056706275
3 5:0.535487596309
3 6:0.537355368934
3 7:0.715938626964
3 8:0.394381078454
3 9:0.397030062151
4 5:0.148451357063
4 6:0.156384619924
4 7:0.999495928572
4 8:0.588906321243
4 9:0.600998011801
5 6:0.0165593174789
5 7:0.901920686215
5 8:0.493703092298
5 9:0.506243000148
6 7:0.898286013084
6 8:0.492389388487
6 9:0.504947806265
7 8:0.479830676501
7 9:0.463161596036
8 9:0.0226475287968
</hsp>