sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-099-098
X
>3U5F-6738-6736
X
>3CUL-C46-C45
X
>1K9M-A891-A890
X
>1K8A-A891-A890
X
>1YJN-0891-0890
X
>3CXC-0891-0890
X
>3CC2-0891-0890
X
>1S72-0891-0890
X
>1JJ2-0891-0890
X
</seq>
<hsp>
0 1:0.999999097117
0 2:0.560026602639
0 3:0.444579237884
0 4:0.459499322809
0 5:0.434453464535
0 6:0.468326974853
0 7:0.455431681996
0 8:0.440934574916
0 9:0.443671497441
1 2:0.997873116081
1 3:0.939362489822
1 4:0.921128267056
1 5:0.924464156336
1 6:0.904311249238
1 7:0.90503400572
1 8:0.907780747208
1 9:0.90876495728
2 3:0.178403315513
2 4:0.169461687217
2 5:0.160684872989
2 6:0.165963083586
2 7:0.174691352881
2 8:0.180730941822
2 9:0.180053130783
3 4:0.0315768486557
3 5:0.0528703517427
3 6:0.0665033431436
3 7:0.0582415962633
3 8:0.0548484884238
3 9:0.0560921906608
4 5:0.0521778937819
4 6:0.05549676904
4 7:0.0489692328286
4 8:0.0504678357572
4 9:0.0521340427507
5 6:0.0513026552325
5 7:0.0422168911714
5 8:0.0370893050871
5 9:0.0384104782568
6 7:0.0247149695024
6 8:0.0319248424232
6 9:0.030501150094
7 8:0.0226906286404
7 9:0.0193696715937
8 9:0.00596273070028
</hsp>