sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1XMQ-X5-X3
X
>2UUB-A76-A74
X
>2UUA-A76-A74
X
>2UXC-A76-A74
X
>1XMQ-A76-A74
X
>2VQE-A76-A74
X
>2VQF-A76-A74
X
>3TRA-A34-A32
X
>1VTQ-A34-A32
X
</seq>
<hsp>
0 1:0.248992609828
0 2:0.363006199927
0 3:0.846798170505
0 4:0.422955812053
0 5:0.451818000358
0 6:0.531762957176
0 7:0.392259832134
0 8:0.419776605183
1 2:0.252028894374
1 3:0.799202386785
1 4:0.260522650025
1 5:0.276484260666
1 6:0.309228902398
1 7:0.398630115689
1 8:0.424426107585
2 3:0.697219555091
2 4:0.220817472569
2 5:0.157173620787
2 6:0.291079858657
2 7:0.424858412641
2 8:0.475939769139
3 4:0.847127014022
3 5:0.713989611274
3 6:0.811118133772
3 7:0.999998981662
3 8:0.995057388328
4 5:0.198574137304
4 6:0.222219223712
4 7:0.398499878691
4 8:0.462955168739
5 6:0.174755068321
5 7:0.502311641993
5 8:0.53888802133
6 7:0.509649859371
6 8:0.53095847091
7 8:0.126982545593
</hsp>