sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2UXC-A1358-A1357
X
>1WRQ-C6-C5
X
>1XMQ-A1352-A1351
X
>1WPU-D6-D5
X
>1WPU-C6-C5
X
>1WRQ-D6-D5
X
>1WMQ-D6-D5
X
>1WMQ-C6-C5
X
</seq>
<hsp>
0 1:0.932103542928
0 2:0.185719271465
0 3:0.981406675245
0 4:0.947452783651
0 5:0.918287552246
0 6:0.929688399474
0 7:0.948285962079
1 2:0.954755979854
1 3:0.262027136784
1 4:0.172069054877
1 5:0.266075474553
1 6:0.336398465775
1 7:0.16830610705
2 3:1.0
2 4:0.967235703502
2 5:0.944633607074
2 6:0.954161630268
2 7:0.975352110246
3 4:0.206967027916
3 5:0.180739843779
3 6:0.218931369544
3 7:0.214950936349
4 5:0.271938797939
4 6:0.320730924453
4 7:0.124257201687
5 6:0.0853568005624
5 7:0.209575987921
6 7:0.253663094142
</hsp>