sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3B4C-B67-B66
X
>2QA4-01630-01629
X
>1DDY-E26-E25
X
>1FFK-01584-01583
X
>2OTJ-01631-01630
X
>1K9M-A1631-A1630
X
>3CME-01631-01630
X
>1YJ9-01631-01630
X
>1QVG-01631-01630
X
</seq>
<hsp>
0 1:0.942633951406
0 2:0.537816089672
0 3:0.930461355517
0 4:0.903322187329
0 5:0.904865928889
0 6:0.914210117803
0 7:0.925382278098
0 8:0.920876146064
1 2:0.999999207811
1 3:0.0756014971366
1 4:0.0709293962229
1 5:0.079758150923
1 6:0.0710343958154
1 7:0.0554276087159
1 8:0.0727914390039
2 3:0.981903860569
2 4:0.964226078751
2 5:0.961874448491
2 6:0.969871631546
2 7:0.980068436495
2 8:0.98487296104
3 4:0.0374188056251
3 5:0.0292097976537
3 6:0.0223213843644
3 7:0.0265896515023
3 8:0.03284241506
4 5:0.0265858356225
4 6:0.0222725851852
4 7:0.0296541379417
4 8:0.0363178086531
5 6:0.0154525989191
5 7:0.029493287136
5 8:0.031277898575
6 7:0.0182862220254
6 8:0.0282475598123
7 8:0.0305927938236
</hsp>