sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A543-A544
X
>2J02-A543-A544
X
>2J03-A2377-A2324
X
>2J01-A2377-A2324
X
>3R8S-A2493-A2440
X
>3CXC-02376-02323
X
>3CPW-02376-02323
X
</seq>
<hsp>
0 1:0.0663592995328
0 2:0.854914019835
0 3:0.820214744254
0 4:0.999999273252
0 5:0.909919312207
0 6:0.835008305329
1 2:0.832178261243
1 3:0.795801954716
1 4:0.99455551025
1 5:0.925448614333
1 6:0.84576083626
2 3:0.0504488344395
2 4:0.462656468632
2 5:0.666952531785
2 6:0.551390871692
3 4:0.472697298433
3 5:0.673091900906
3 6:0.553031924166
4 5:0.364386995831
4 6:0.337773747979
5 6:0.199111697726
</hsp>