sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-21777-21775
X
>3F1H-A1782-A2572
X
>3F1F-A1782-A2572
X
>3U5H-51948-52710
X
>3U5D-11944-12709
X
>3R8T-A2705-A1654
X
>3R8S-A2706-A1654
X
</seq>
<hsp>
0 1:0.936835531313
0 2:0.937393120971
0 3:0.937334590059
0 4:0.96385739365
0 5:0.999999944254
0 6:0.976930094594
1 2:0.00857588886206
1 3:0.0335516750723
1 4:0.0503561609818
1 5:0.24474789984
1 6:0.198538251821
2 3:0.029670073674
2 4:0.0503525016115
2 5:0.243019406512
2 6:0.19646563003
3 4:0.0484943890861
3 5:0.237933231855
3 6:0.191987800804
4 5:0.233417530994
4 6:0.183591588087
5 6:0.0772111287729
</hsp>