sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1241-X1566
X
>2J03-A1275-A1588
X
>2J01-A1275-A1588
X
>3KNI-A1281-A1587
X
>3F1H-A1345-A1666
X
>3F1F-A1345-A1666
X
</seq>
<hsp>
0 1:0.623985395249
0 2:0.594509615591
0 3:0.559649035509
0 4:0.843269132216
0 5:0.830689243455
1 2:0.0805368562216
1 3:0.877815733307
1 4:0.453703282536
1 5:0.432963828743
2 3:0.88625802254
2 4:0.459259686059
2 5:0.441364728893
3 4:0.9999979096
3 5:0.972939497944
4 5:0.0860041886273
</hsp>