sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2YIE-X23-X21
X
>3R8S-A1390-A1388
X
>3F2Q-X71-X69
X
>3F4H-Y18-Y16
X
>3F2Q-X23-X21
X
>3F4H-X23-X21
X
>3F2T-X23-X21
X
>2YIE-Z18-Z16
X
>1ZE2-C14-C12
X
</seq>
<hsp>
0 1:0.424841337513
0 2:0.280373987882
0 3:0.2830972902
0 4:0.192509762343
0 5:0.363291356976
0 6:0.258235600192
0 7:0.350517784321
0 8:0.740344417484
1 2:0.412546144677
1 3:0.449278162275
1 4:0.391071890373
1 5:0.377951549175
1 6:0.365431052644
1 7:0.443930969439
1 8:0.880765644303
2 3:0.217437851506
2 4:0.195177843774
2 5:0.287701342799
2 6:0.192965544633
2 7:0.14214760657
2 8:0.850169345181
3 4:0.117881518075
3 5:0.29134731206
3 6:0.156154304529
3 7:0.188739294088
3 8:0.848601985237
4 5:0.248358793701
4 6:0.105113605731
4 7:0.208241746301
4 8:0.801104902383
5 6:0.16731384184
5 7:0.222429302286
5 8:1.0
6 7:0.176411062878
6 8:0.882468286911
7 8:0.934309179915
</hsp>