sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2DU4-C58-C56
X
>2ZHA-B18-B16
X
>2DU3-D58-D56
X
>3KNH-Y58-Y56
X
>2J02-W59-W57
X
>2TRA-A58-A56
X
>1ASZ-S58-S56
X
>1ASY-S58-S56
X
</seq>
<hsp>
0 1:0.637205459591
0 2:0.27727101681
0 3:0.652633189119
0 4:0.40292816605
0 5:0.617333085356
0 6:0.210053691413
0 7:0.267183042522
1 2:0.567034422684
1 3:0.473118936815
1 4:0.979829982625
1 5:0.530594080953
1 6:0.577972653642
1 7:0.456968637766
2 3:0.474428031641
2 4:0.580568568492
2 5:0.58902582127
2 6:0.354884728547
2 7:0.346251319917
3 4:0.999999279911
3 5:0.650132539455
3 6:0.659647879299
3 7:0.56832282805
4 5:0.78153399377
4 6:0.42952021745
4 7:0.553865484509
5 6:0.459848875028
5 7:0.388751675658
6 7:0.154730447783
</hsp>