sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-21580-21578
X
>3U5D-4152-4150
X
>2QA4-986-01042
X
>3U5F-61592-61590
X
>2ZJR-X1804-X1832
X
>1M5P-B60-A10
X
>1M5V-E60-D10
X
>1M5O-E60-D10
X
</seq>
<hsp>
0 1:0.516482895483
0 2:0.676550271277
0 3:0.0699416276461
0 4:0.384155965343
0 5:0.828127412444
0 6:0.822114902832
0 7:0.85551387864
1 2:0.603223210914
1 3:0.495926882093
1 4:0.437591882521
1 5:0.983590022996
1 6:0.971045968835
1 7:1.0
2 3:0.6454247394
2 4:0.433645767429
2 5:0.548735267756
2 6:0.512528696812
2 7:0.530466876302
3 4:0.327865002076
3 5:0.799401142586
3 6:0.793167159855
3 7:0.827972253891
4 5:0.658989287587
4 6:0.645624482735
4 7:0.681904267532
5 6:0.0480644007336
5 7:0.0660361542553
6 7:0.0476544840824
</hsp>