ClaRNA

Doublet Group distance statistics: 49201

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Distances from reference structure (by RMSD)

1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
N3 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
C1' A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
N1 A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
C4 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C6 A 0, 0.000, 0.003, 0.007, 0.007 max_d=0.007 avg_d=0.003 std_dev=0.003
C2' A 0, 0.000, 0.003, 0.007, 0.007 max_d=0.007 avg_d=0.003 std_dev=0.003
C5 A 0, 0.000, 0.004, 0.007, 0.007 max_d=0.007 avg_d=0.004 std_dev=0.004
C2 A 0, 0.000, 0.004, 0.009, 0.009 max_d=0.009 avg_d=0.004 std_dev=0.004
O4' A 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
C3' A 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
O2' A 0, 0.000, 0.008, 0.016, 0.016 max_d=0.016 avg_d=0.008 std_dev=0.008
O5' A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
O3' A 0, 0.000, 0.012, 0.025, 0.025 max_d=0.025 avg_d=0.012 std_dev=0.012
C4' A 0, 0.000, 0.013, 0.025, 0.025 max_d=0.025 avg_d=0.013 std_dev=0.013
O2 A 0, 0.000, 0.013, 0.026, 0.026 max_d=0.026 avg_d=0.013 std_dev=0.013
C5' A 0, 0.000, 0.013, 0.027, 0.027 max_d=0.027 avg_d=0.013 std_dev=0.013
O4 A 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
P A 0, 0.000, 0.015, 0.030, 0.030 max_d=0.030 avg_d=0.015 std_dev=0.015
OP2 A 0, 0.000, 0.018, 0.035, 0.035 max_d=0.035 avg_d=0.018 std_dev=0.018
OP1 A 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
O3' B 0, 0.000, 0.024, 0.049, 0.049 max_d=0.049 avg_d=0.024 std_dev=0.024
O4' B 0, 0.000, 0.026, 0.053, 0.053 max_d=0.053 avg_d=0.026 std_dev=0.026
C4' B 0, 0.000, 0.029, 0.058, 0.058 max_d=0.058 avg_d=0.029 std_dev=0.029
C6 B 0, 0.000, 0.030, 0.060, 0.060 max_d=0.060 avg_d=0.030 std_dev=0.030
C5 B 0, 0.000, 0.032, 0.064, 0.064 max_d=0.064 avg_d=0.032 std_dev=0.032
N1 B 0, 0.000, 0.033, 0.065, 0.065 max_d=0.065 avg_d=0.033 std_dev=0.033
C2 B 0, 0.000, 0.033, 0.066, 0.066 max_d=0.066 avg_d=0.033 std_dev=0.033
C4 B 0, 0.000, 0.034, 0.067, 0.067 max_d=0.067 avg_d=0.034 std_dev=0.034
N3 B 0, 0.000, 0.034, 0.067, 0.067 max_d=0.067 avg_d=0.034 std_dev=0.034
C1' B 0, 0.000, 0.034, 0.068, 0.068 max_d=0.068 avg_d=0.034 std_dev=0.034
C3' B 0, 0.000, 0.034, 0.068, 0.068 max_d=0.068 avg_d=0.034 std_dev=0.034
O2 B 0, 0.000, 0.036, 0.073, 0.073 max_d=0.073 avg_d=0.036 std_dev=0.036
C5' B 0, 0.000, 0.040, 0.079, 0.079 max_d=0.079 avg_d=0.040 std_dev=0.040
N4 B 0, 0.000, 0.040, 0.080, 0.080 max_d=0.080 avg_d=0.040 std_dev=0.040
C2' B 0, 0.000, 0.043, 0.086, 0.086 max_d=0.086 avg_d=0.043 std_dev=0.043
O5' B 0, 0.000, 0.044, 0.087, 0.087 max_d=0.087 avg_d=0.044 std_dev=0.044
P B 0, 0.000, 0.047, 0.094, 0.094 max_d=0.094 avg_d=0.047 std_dev=0.047
OP2 B 0, 0.000, 0.048, 0.097, 0.097 max_d=0.097 avg_d=0.048 std_dev=0.048
OP1 B 0, 0.000, 0.050, 0.101, 0.101 max_d=0.101 avg_d=0.050 std_dev=0.050
O2' B 0, 0.000, 0.061, 0.122, 0.122 max_d=0.122 avg_d=0.061 std_dev=0.061

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00
C2 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00
C4 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00
C4' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00
C5' 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00
N3 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00
O2 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00
O2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00
O3' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00
O4 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00
O4' 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01
O5' 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.02 0.00 0.00
OP1 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.02 0.00 0.00 0.00
OP2 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00
P 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.02 0.00 0.00 0.01 0.01 0.01 0.01
C2 0.01 0.01 0.02 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.03 0.00 0.01 0.01 0.00 0.01 0.01
C2' 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.00 0.00 0.01 0.00 0.01 0.01
C3' 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.01 0.01
C4 0.02 0.01 0.02 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.02 0.03 0.00 0.01 0.00 0.00 0.00 0.00
C4' 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.02 0.01 0.01 0.00 0.00 0.01 0.00
C5 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.02 0.03 0.00 0.01 0.00 0.00 0.00 0.00
C5' 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00
C6 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.03 0.00 0.01 0.00 0.00 0.00 0.00
N1 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.03 0.00 0.00 0.01 0.00 0.01 0.01
N3 0.02 0.01 0.02 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.02 0.03 0.01 0.01 0.00 0.00 0.00 0.00
O2 0.01 0.01 0.02 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.03 0.00 0.00 0.01 0.01 0.01 0.01
O2' 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.01 0.00 0.01 0.00 0.01 0.01
O3' 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.01
O4 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.03 0.00 0.01 0.00 0.01 0.00 0.00
O4' 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01
O5' 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01
OP1 0.02 0.02 0.02 0.02 0.02 0.02 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.01 0.02 0.02 0.01 0.03 0.02
OP2 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01
P 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.01

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01
C2 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.02 0.01
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00
C4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00
C5 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00
C6 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00
N1 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
N4 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00
O2 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00
O2' 0.01 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.02 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.02 0.01
O3' 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.01
O5' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00
OP1 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
OP2 0.01 0.00 0.02 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.02 0.01 0.01 0.00 0.00 0.00 0.00
P 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00