sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1NUV-E9-E8
X
>429D-C9-C8
X
>1NUV-C9-C8
X
>1NUJ-E9-E8
X
>1NUJ-C9-C8
X
>1GID-B62-B61
X
>2R8S-R63-R62
X
>1GID-A62-A61
X
</seq>
<hsp>
0 1:0.0548725981674
0 2:0.0324863259727
0 3:0.0348573553945
0 4:0.0393972636411
0 5:0.996696123737
0 6:0.986111187953
0 7:0.987984816427
1 2:0.0460117310618
1 3:0.0383995822023
1 4:0.0441001028106
1 5:1.0
1 6:0.987113569461
1 7:0.99229680179
2 3:0.0270090492861
2 4:0.0207384636316
2 5:0.997594806796
2 6:0.987089553268
2 7:0.989731229478
3 4:0.0174242720845
3 5:0.997233430567
3 6:0.986542619877
3 7:0.989097309368
4 5:0.996271697737
4 6:0.986374352198
4 7:0.988845201099
5 6:0.101312263748
5 7:0.0584804559392
6 7:0.0844398426419
</hsp>