sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A347-A346
X
>3R2C-R5-R4
X
>2VQF-A698-A697
X
>1FJG-A698-A697
X
>2ZJR-X2454-X2453
X
>3F1E-A698-A697
X
>3F1E-A444-A443
X
>3F1G-A698-A697
X
>3OGE-A698-A697
X
>3F1G-A444-A443
X
>3OGY-A698-A697
X
>1ASZ-R73-R72
X
</seq>
<hsp>
0 1:0.263644974485
0 2:0.907415861451
0 3:0.910855197929
0 4:1.0
0 5:0.917666998463
0 6:0.933001741507
0 7:0.91299615453
0 8:0.949603021422
0 9:0.934527406894
0 10:0.952907737993
0 11:0.988110099355
1 2:0.843000233908
1 3:0.83683068634
1 4:0.921943032478
1 5:0.845998978967
1 6:0.851637199296
1 7:0.840969886462
1 8:0.883996257415
1 9:0.853065882821
1 10:0.886825979595
1 11:0.92433365804
2 3:0.0510925772979
2 4:0.178402422154
2 5:0.119261386315
2 6:0.173688138468
2 7:0.122591165676
2 8:0.127592749102
2 9:0.174374240118
2 10:0.128000663339
2 11:0.0881798473704
3 4:0.166818248104
3 5:0.111143274155
3 6:0.147499925937
3 7:0.11314810636
3 8:0.125906582367
3 9:0.148189117712
3 10:0.125861388682
3 11:0.109654288641
4 5:0.202375295299
4 6:0.132037130831
4 7:0.202977329708
4 8:0.195643569954
4 9:0.132002473507
4 10:0.194391532653
4 11:0.148541388325
5 6:0.1272294892
5 7:0.00790063987694
5 8:0.0467815848899
5 9:0.1271528084
5 10:0.0474991335683
5 11:0.158325530076
6 7:0.123645203102
6 8:0.136441341031
6 9:0.00278012458274
6 10:0.136535752248
6 11:0.191078938531
7 8:0.050896753876
7 9:0.123603852197
7 10:0.0519228774264
7 11:0.163468844871
8 9:0.136199657334
8 10:0.00609855582269
8 11:0.143770273212
9 10:0.136223858239
9 11:0.191231453269
10 11:0.142813579062
</hsp>