sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>4TNA-A60-A59
X
>1TN1-A60-A59
X
>1TN2-A60-A59
X
>3CCU-01410-01409
X
>2FK6-R40-R39
X
>3CCE-01410-01409
X
>3R8O-A1280-A1279
X
>3G71-01410-01409
X
>3CMA-01410-01409
X
>1EVV-A60-A59
X
>1EHZ-A60-A59
X
</seq>
<hsp>
0 1:0.0933767573572
0 2:0.0933767573572
0 3:0.682267527618
0 4:0.193974965822
0 5:0.659432266117
0 6:0.465974362696
0 7:0.647572072911
0 8:0.661772542741
0 9:0.0780523489995
0 10:0.093822979411
1 2:7.79664462236e-07
1 3:0.661837574141
1 4:0.237689984188
1 5:0.646586551814
1 6:0.510428594663
1 7:0.628909025135
1 8:0.640453785553
1 9:0.114686686724
1 10:0.122785664194
2 3:0.661837574141
2 4:0.237689984188
2 5:0.646586551814
2 6:0.510428594663
2 7:0.628909025135
2 8:0.640453785553
2 9:0.114686686724
2 10:0.122785664194
3 4:0.702585346482
3 5:0.0848322704068
3 6:0.999994676106
3 7:0.0530175049993
3 8:0.0499487391236
3 9:0.666645935193
3 10:0.682556722142
4 5:0.686506854345
4 6:0.379066409997
4 7:0.672708732749
4 8:0.682558627937
4 9:0.218717526918
4 10:0.234270063847
5 6:0.990838215409
5 7:0.0527752071599
5 8:0.0862888391396
5 9:0.646122251399
5 10:0.663654775641
6 7:0.977292364187
6 8:0.984069817887
6 9:0.458145735219
6 10:0.453357745563
7 8:0.0438612529994
7 9:0.633406145522
7 10:0.650675780394
8 9:0.64648859423
8 10:0.66456225734
9 10:0.0422745386713
</hsp>