sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OHD-A774-A773
X
>3OHC-A774-A773
X
>3U5B-2989-2988
X
>3U5F-61001-61000
X
>2QA4-99-98
X
>3R2C-S5-S4
X
>2J02-A774-A773
X
>2J00-A774-A773
X
>3R8S-A1342-A1341
X
>1MZP-B34-B33
X
</seq>
<hsp>
0 1:0.01040186588
0 2:0.0580663556622
0 3:0.0950963354969
0 4:0.264130326032
0 5:0.771279417385
0 6:0.0919668409905
0 7:0.0924574064929
0 8:0.304594620514
0 9:0.31868210373
1 2:0.0512033275428
1 3:0.0957601640106
1 4:0.256864619362
1 5:0.778212055293
1 6:0.0949297205728
1 7:0.0954480365934
1 8:0.298424129075
1 9:0.311991453627
2 3:0.0794764705278
2 4:0.22122493244
2 5:0.809963439276
2 6:0.100332844535
2 7:0.0999495372582
2 8:0.252492220978
2 9:0.263763542382
3 4:0.272612453253
3 5:0.776510633526
3 6:0.0664087655415
3 7:0.0628043311169
3 8:0.273464618363
3 9:0.279508384905
4 5:0.959116871125
4 6:0.301122521115
4 7:0.301518718611
4 8:0.149715871337
4 9:0.172640767823
5 6:0.73773782601
5 7:0.740169660917
5 8:0.984826559938
5 9:0.999999903385
6 7:0.00600431516532
6 8:0.310622283964
6 9:0.320372575432
7 8:0.309822301052
7 9:0.319179845071
8 9:0.0515923729153
</hsp>