sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OI1-A428-A427
X
>2QA4-02186-02185
X
>3OHK-A428-A427
X
>1YJN-02187-02186
X
>3CCS-02187-02186
X
>3CCL-02187-02186
X
>3CCE-02187-02186
X
>1VQ6-02187-02186
X
>1VQ7-02187-02186
X
>1YI2-02187-02186
X
>1VQ4-02187-02186
X
>1Q86-A2187-A2186
X
</seq>
<hsp>
0 1:0.94596540531
0 2:0.0721175057412
0 3:0.928298159388
0 4:0.917091331268
0 5:0.978695463662
0 6:0.844250537239
0 7:0.968733738796
0 8:0.963899685679
0 9:0.812743909916
0 10:0.936705855955
0 11:0.714207037323
1 2:0.972882620332
1 3:0.178655869111
1 4:0.199490632374
1 5:0.169160149549
1 6:0.185072696835
1 7:0.172043414085
1 8:0.194420011768
1 9:0.243763140109
1 10:0.14141487549
1 11:0.299750839915
2 3:0.948451691723
2 4:0.946239639761
2 5:0.999998269723
2 6:0.867214446036
2 7:0.990924500248
2 8:0.983212144642
2 9:0.830546809963
2 10:0.960358603609
2 11:0.731393711107
3 4:0.192626744634
3 5:0.0958548207061
3 6:0.133135627904
3 7:0.146104130593
3 8:0.100824059438
3 9:0.135637498248
3 10:0.111935555855
3 11:0.226725295193
4 5:0.16469676565
4 6:0.17522074407
4 7:0.209780961953
4 8:0.201071643782
4 9:0.240188630879
4 10:0.173446360203
4 11:0.296506419682
5 6:0.148465547153
5 7:0.097117478729
5 8:0.057144793621
5 9:0.193226494118
5 10:0.0946739415485
5 11:0.286495513301
6 7:0.136039320239
6 8:0.135692454393
6 9:0.0960745906917
6 10:0.0999712582736
6 11:0.167911454152
7 8:0.0751103221435
7 9:0.198284590671
7 10:0.0763569800508
7 11:0.289920311772
8 9:0.170606536362
8 10:0.0972439653811
8 11:0.268548416109
9 10:0.164294098433
9 11:0.104920700742
10 11:0.253137897916
</hsp>