sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2650-A2649
X
>3CCR-02534-02533
X
>3CCR-01221-01220
X
>3R8S-A735-A734
X
>2ZJR-X1871-X1870
X
>3CCS-01221-01220
X
>3OHK-A1597-A1596
X
>3OH5-A1922-A1921
X
>3OHK-A1922-A1921
X
</seq>
<hsp>
0 1:0.282767265846
0 2:0.873332880592
0 3:0.162228742091
0 4:0.706687592829
0 5:0.797262200244
0 6:0.216456965627
0 7:0.650567593426
0 8:0.652171858821
1 2:0.828803460326
1 3:0.326218924756
1 4:0.491926178152
1 5:0.766976131513
1 6:0.434998898559
1 7:0.42607808748
1 8:0.43001197361
2 3:0.797367454048
2 4:1.0
2 5:0.09890364255
2 6:0.80333532504
2 7:0.925758400043
2 8:0.85983711089
3 4:0.764126808706
3 5:0.722993661445
3 6:0.131190502307
3 7:0.698290917696
3 8:0.686468994229
4 5:0.9572904875
4 6:0.856459584036
4 7:0.112893911697
4 8:0.173068643771
5 6:0.723702219544
5 7:0.880671112611
5 8:0.816197011148
6 7:0.79417503836
6 8:0.779644755483
7 8:0.0817645137184
</hsp>