ClaRNA

Doublet Group distance statistics: 49261

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Distances from reference structure (by RMSD)

1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C5 A 0, 0.000, 0.001, 0.003, 0.003 max_d=0.003 avg_d=0.001 std_dev=0.001
N1 A 0, 0.000, 0.005, 0.010, 0.010 max_d=0.010 avg_d=0.005 std_dev=0.005
C6 A 0, 0.000, 0.005, 0.011, 0.011 max_d=0.011 avg_d=0.005 std_dev=0.005
C4 A 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
N3 A 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
O2' A 0, 0.000, 0.009, 0.019, 0.019 max_d=0.019 avg_d=0.009 std_dev=0.009
C2 A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
C1' A 0, 0.000, 0.011, 0.021, 0.021 max_d=0.021 avg_d=0.011 std_dev=0.011
N4 A 0, 0.000, 0.020, 0.039, 0.039 max_d=0.039 avg_d=0.020 std_dev=0.020
O2 A 0, 0.000, 0.020, 0.041, 0.041 max_d=0.041 avg_d=0.020 std_dev=0.020
C2' A 0, 0.000, 0.052, 0.104, 0.104 max_d=0.104 avg_d=0.052 std_dev=0.052
O4' A 0, 0.000, 0.081, 0.163, 0.163 max_d=0.163 avg_d=0.081 std_dev=0.081
C3' A 0, 0.000, 0.135, 0.270, 0.270 max_d=0.270 avg_d=0.135 std_dev=0.135
C4' A 0, 0.000, 0.138, 0.277, 0.277 max_d=0.277 avg_d=0.138 std_dev=0.138
C5' A 0, 0.000, 0.180, 0.360, 0.360 max_d=0.360 avg_d=0.180 std_dev=0.180
O3' A 0, 0.000, 0.266, 0.533, 0.533 max_d=0.533 avg_d=0.266 std_dev=0.266
P B 0, 0.000, 0.373, 0.746, 0.746 max_d=0.746 avg_d=0.373 std_dev=0.373
O5' B 0, 0.000, 0.469, 0.937, 0.937 max_d=0.937 avg_d=0.469 std_dev=0.469
OP2 B 0, 0.000, 0.624, 1.249, 1.249 max_d=1.249 avg_d=0.624 std_dev=0.624
OP1 B 0, 0.000, 0.672, 1.345, 1.345 max_d=1.345 avg_d=0.672 std_dev=0.672
C5' B 0, 0.000, 1.139, 2.277, 2.277 max_d=2.277 avg_d=1.139 std_dev=1.139
O5' A 0, 0.000, 1.279, 2.559, 2.559 max_d=2.559 avg_d=1.279 std_dev=1.279
C4' B 0, 0.000, 1.389, 2.777, 2.777 max_d=2.777 avg_d=1.389 std_dev=1.389
C3' B 0, 0.000, 1.747, 3.494, 3.494 max_d=3.494 avg_d=1.747 std_dev=1.747
O3' B 0, 0.000, 1.878, 3.755, 3.755 max_d=3.755 avg_d=1.878 std_dev=1.878
OP1 A 0, 0.000, 1.991, 3.982, 3.982 max_d=3.982 avg_d=1.991 std_dev=1.991
P A 0, 0.000, 2.037, 4.075, 4.075 max_d=4.075 avg_d=2.037 std_dev=2.037
O4' B 0, 0.000, 2.201, 4.403, 4.403 max_d=4.403 avg_d=2.201 std_dev=2.201
OP2 A 0, 0.000, 2.738, 5.476, 5.476 max_d=5.476 avg_d=2.738 std_dev=2.738
C2' B 0, 0.000, 2.741, 5.483, 5.483 max_d=5.483 avg_d=2.741 std_dev=2.741
C1' B 0, 0.000, 2.893, 5.786, 5.786 max_d=5.786 avg_d=2.893 std_dev=2.893
O2' B 0, 0.000, 3.165, 6.330, 6.330 max_d=6.330 avg_d=3.165 std_dev=3.165
C8 B 0, 0.000, 3.339, 6.677, 6.677 max_d=6.677 avg_d=3.339 std_dev=3.339
N9 B 0, 0.000, 3.499, 6.998, 6.998 max_d=6.998 avg_d=3.499 std_dev=3.499
N7 B 0, 0.000, 4.095, 8.189, 8.189 max_d=8.189 avg_d=4.095 std_dev=4.095
C4 B 0, 0.000, 4.487, 8.975, 8.975 max_d=8.975 avg_d=4.487 std_dev=4.487
C5 B 0, 0.000, 4.859, 9.717, 9.717 max_d=9.717 avg_d=4.859 std_dev=4.859
N3 B 0, 0.000, 5.064, 10.128, 10.128 max_d=10.128 avg_d=5.064 std_dev=5.064
C6 B 0, 0.000, 5.955, 11.910, 11.910 max_d=11.910 avg_d=5.955 std_dev=5.955
C2 B 0, 0.000, 6.094, 12.188, 12.188 max_d=12.188 avg_d=6.094 std_dev=6.094
N6 B 0, 0.000, 6.449, 12.899, 12.899 max_d=12.899 avg_d=6.449 std_dev=6.449
N1 B 0, 0.000, 6.573, 13.145, 13.145 max_d=13.145 avg_d=6.573 std_dev=6.573

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.00 0.14 0.13 0.20 0.13
C2 0.01 0.00 0.01 0.04 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.05 0.02 0.33 0.34 0.23 0.46
C2' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.20 0.08 0.33 0.05
C3' 0.00 0.04 0.00 0.00 0.05 0.00 0.04 0.01 0.02 0.03 0.05 0.05 0.03 0.01 0.00 0.00 0.28 0.19 0.26 0.09
C4 0.01 0.00 0.01 0.05 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.08 0.02 0.53 0.69 0.77 0.85
C4' 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.02 0.02 0.00 0.01 0.06 0.48 0.13
C5 0.00 0.00 0.00 0.04 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.06 0.01 0.57 0.79 0.86 0.93
C5' 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01 0.00 0.00 0.32 0.25 0.01
C6 0.00 0.01 0.01 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.03 0.00 0.49 0.65 0.57 0.74
N1 0.00 0.01 0.01 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.03 0.01 0.34 0.39 0.22 0.46
N3 0.01 0.00 0.01 0.05 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.07 0.02 0.44 0.50 0.50 0.66
N4 0.01 0.00 0.01 0.05 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.09 0.02 0.58 0.79 0.95 0.97
O2 0.02 0.00 0.01 0.03 0.00 0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.00 0.02 0.03 0.03 0.23 0.16 0.01 0.27
O2' 0.00 0.01 0.00 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.04 0.02 0.03 0.17 0.67 0.21
O3' 0.01 0.05 0.01 0.00 0.08 0.02 0.06 0.01 0.03 0.03 0.07 0.09 0.03 0.04 0.00 0.01 0.21 0.04 0.50 0.10
O4' 0.00 0.02 0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.02 0.02 0.03 0.02 0.01 0.00 0.00 0.13 0.26 0.05
O5' 0.14 0.33 0.20 0.28 0.53 0.01 0.57 0.00 0.49 0.34 0.44 0.58 0.23 0.03 0.21 0.00 0.00 0.01 0.01 0.00
OP1 0.13 0.34 0.08 0.19 0.69 0.06 0.79 0.32 0.65 0.39 0.50 0.79 0.16 0.17 0.04 0.13 0.01 0.00 0.00 0.00
OP2 0.20 0.23 0.33 0.26 0.77 0.48 0.86 0.25 0.57 0.22 0.50 0.95 0.01 0.67 0.50 0.26 0.01 0.00 0.00 0.00
P 0.13 0.46 0.05 0.09 0.85 0.13 0.93 0.01 0.74 0.46 0.66 0.97 0.27 0.21 0.10 0.05 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 1.71 4.16 1.23 0.73 2.98 0.81 3.11 0.51 3.88 1.82 4.41 3.47 4.00 2.36 2.16 1.06 0.18 1.48 0.20 0.40 0.21 0.15
C2 1.81 3.93 1.36 0.79 2.99 0.81 3.14 0.37 3.77 1.96 4.14 3.37 3.84 2.46 2.26 1.26 0.30 1.51 0.14 0.39 0.22 0.09
C2' 1.66 4.07 1.15 0.66 2.92 0.76 3.07 0.47 3.81 1.82 4.31 3.39 3.97 2.36 2.12 0.97 0.08 1.45 0.20 0.35 0.14 0.17
C3' 1.54 3.99 0.99 0.57 2.78 0.74 2.89 0.55 3.63 1.65 4.17 3.31 3.74 2.16 1.98 0.78 0.04 1.41 0.27 0.36 0.05 0.24
C4 1.69 3.52 1.22 0.70 2.73 0.77 2.70 0.32 3.15 1.66 3.54 3.13 3.04 2.03 2.05 1.13 0.24 1.46 0.12 0.38 0.22 0.08
C4' 1.50 4.05 0.98 0.58 2.76 0.75 2.85 0.60 3.62 1.57 4.23 3.34 3.72 2.08 1.93 0.76 0.02 1.39 0.27 0.38 0.14 0.23
C5 1.54 3.68 1.06 0.62 2.65 0.76 2.59 0.47 3.13 1.45 3.65 3.19 3.01 1.84 1.90 0.91 0.10 1.42 0.19 0.43 0.20 0.15
C5' 1.33 3.88 0.80 0.47 2.55 0.70 2.59 0.65 3.34 1.33 3.99 3.17 3.39 1.81 1.73 0.55 0.15 1.30 0.30 0.35 0.12 0.25
C6 1.58 3.94 1.09 0.65 2.77 0.78 2.78 0.52 3.44 1.56 4.02 3.33 3.39 2.01 1.97 0.91 0.10 1.44 0.22 0.42 0.20 0.17
N1 1.71 4.06 1.23 0.73 2.94 0.81 3.04 0.47 3.74 1.80 4.25 3.43 3.79 2.30 2.15 1.09 0.20 1.49 0.19 0.41 0.21 0.14
N3 1.81 3.66 1.36 0.78 2.89 0.79 2.98 0.29 3.48 1.91 3.80 3.22 3.47 2.35 2.22 1.29 0.33 1.48 0.10 0.37 0.22 0.06
N4 1.64 3.05 1.19 0.66 2.46 0.71 2.36 0.18 2.67 1.50 2.99 2.81 2.52 1.78 1.92 1.15 0.25 1.41 0.06 0.31 0.22 0.02
O2 1.88 3.95 1.45 0.84 3.05 0.82 3.26 0.34 3.91 2.10 4.22 3.39 4.08 2.63 2.34 1.37 0.36 1.51 0.12 0.38 0.23 0.08
O2' 1.71 4.14 1.22 0.70 2.99 0.78 3.18 0.47 3.95 1.91 4.43 3.45 4.17 2.48 2.19 1.04 0.13 1.47 0.19 0.35 0.16 0.15
O3' 1.52 3.95 0.96 0.54 2.76 0.73 2.88 0.57 3.61 1.65 4.15 3.28 3.75 2.17 1.97 0.73 0.08 1.41 0.31 0.36 0.03 0.29
O4' 1.59 4.15 1.10 0.67 2.86 0.80 2.94 0.59 3.73 1.64 4.35 3.42 3.82 2.15 2.02 0.91 0.10 1.43 0.24 0.41 0.22 0.18
O5' 1.77 4.13 1.23 0.94 2.86 1.24 2.80 1.23 3.47 1.63 4.14 3.50 3.42 2.03 2.08 1.02 0.34 1.81 0.93 1.04 0.51 0.93
OP1 2.19 4.55 1.74 1.54 3.20 1.80 3.07 1.85 3.72 1.91 4.48 3.93 3.61 2.25 2.43 1.53 1.01 2.24 1.48 1.48 0.85 1.37
OP2 2.42 4.63 1.94 1.75 3.37 2.08 3.21 2.16 3.80 2.12 4.51 4.08 3.67 2.43 2.64 1.73 1.21 2.53 1.89 1.73 1.27 1.76
P 2.30 4.61 1.80 1.59 3.32 1.90 3.19 1.96 3.81 2.06 4.53 4.02 3.70 2.40 2.56 1.58 1.02 2.38 1.62 1.60 1.07 1.54

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.03 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.02 0.03 0.01 0.00 0.00 0.00 0.01 0.00 0.14 0.87 0.87 0.57
C2 0.03 0.00 0.12 0.41 0.00 0.63 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.30 0.50 1.21 2.51 1.65 1.78
C2' 0.00 0.12 0.00 0.00 0.07 0.01 0.05 0.00 0.07 0.02 0.10 0.12 0.06 0.00 0.02 0.00 0.00 0.00 0.09 0.40 0.56 0.24
C3' 0.00 0.41 0.00 0.00 0.15 0.00 0.00 0.00 0.10 0.29 0.28 0.41 0.02 0.22 0.06 0.01 0.00 0.00 0.23 0.13 0.17 0.01
C4 0.01 0.00 0.07 0.15 0.00 0.27 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.09 0.26 0.58 1.71 1.17 1.13
C4' 0.00 0.63 0.01 0.00 0.27 0.00 0.08 0.00 0.22 0.36 0.46 0.61 0.12 0.23 0.03 0.03 0.01 0.00 0.00 0.35 0.37 0.19
C5 0.01 0.00 0.05 0.00 0.00 0.08 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.03 0.10 0.33 1.55 0.90 0.91
C5' 0.01 1.10 0.00 0.00 0.44 0.00 0.15 0.00 0.41 0.55 0.82 1.02 0.24 0.37 0.03 0.03 0.01 0.01 0.00 0.28 0.16 0.01
C6 0.01 0.00 0.07 0.10 0.00 0.22 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.05 0.21 0.59 1.92 1.10 1.19
C8 0.01 0.00 0.02 0.29 0.00 0.36 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.24 0.28 0.32 0.67 0.31 0.18
N1 0.02 0.00 0.10 0.28 0.00 0.46 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.19 0.38 0.98 2.36 1.45 1.59
N3 0.03 0.00 0.12 0.41 0.00 0.61 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.30 0.51 1.10 2.25 1.58 1.62
N6 0.01 0.00 0.06 0.02 0.00 0.12 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.02 0.13 0.44 1.79 0.92 1.04
N7 0.00 0.00 0.00 0.22 0.00 0.23 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.20 0.16 0.16 0.96 0.41 0.38
N9 0.00 0.00 0.02 0.06 0.00 0.03 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.05 0.01 0.14 1.11 0.81 0.65
O2' 0.00 0.41 0.00 0.01 0.18 0.03 0.07 0.03 0.16 0.20 0.31 0.40 0.10 0.12 0.01 0.00 0.02 0.02 0.12 0.20 0.66 0.18
O3' 0.01 0.30 0.00 0.00 0.09 0.01 0.03 0.01 0.05 0.24 0.19 0.30 0.02 0.20 0.05 0.02 0.00 0.01 0.41 0.38 0.03 0.31
O4' 0.00 0.50 0.00 0.00 0.26 0.00 0.10 0.01 0.21 0.28 0.38 0.51 0.13 0.16 0.01 0.02 0.01 0.00 0.25 0.93 0.84 0.63
O5' 0.14 1.21 0.09 0.23 0.58 0.00 0.33 0.00 0.59 0.32 0.98 1.10 0.44 0.16 0.14 0.12 0.41 0.25 0.00 0.00 0.01 0.00
OP1 0.87 2.51 0.40 0.13 1.71 0.35 1.55 0.28 1.92 0.67 2.36 2.25 1.79 0.96 1.11 0.20 0.38 0.93 0.00 0.00 0.00 0.00
OP2 0.87 1.65 0.56 0.17 1.17 0.37 0.90 0.16 1.10 0.31 1.45 1.58 0.92 0.41 0.81 0.66 0.03 0.84 0.01 0.00 0.00 0.00
P 0.57 1.78 0.24 0.01 1.13 0.19 0.91 0.01 1.19 0.18 1.59 1.62 1.04 0.38 0.65 0.18 0.31 0.63 0.00 0.00 0.00 0.00