sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FJG-A783-A782
X
>3KNH-A774-A773
X
>2VQE-A783-A782
X
>2UXC-A783-A782
X
>2UUB-A783-A782
X
>2UUA-A783-A782
X
>3R8O-A803-A802
X
>1XMQ-A783-A782
X
>2VQF-A783-A782
X
>1N32-A783-A782
X
</seq>
<hsp>
0 1:0.749015921266
0 2:0.383761699456
0 3:0.553657992704
0 4:0.396942884777
0 5:0.58693985255
0 6:0.944565218808
0 7:0.587464597406
0 8:0.497342620985
0 9:0.512011198259
1 2:0.839239532421
1 3:0.836802380422
1 4:0.7401994672
1 5:0.580689783045
1 6:0.999994870937
1 7:0.701074224361
1 8:0.824538867545
1 9:0.801228378906
2 3:0.261447530569
2 4:0.167574082415
2 5:0.480604267509
2 6:0.800515895326
2 7:0.450067948638
2 8:0.35622399975
2 9:0.28202713596
3 4:0.178535198762
3 5:0.363619604686
3 6:0.646179106955
3 7:0.3497331705
3 8:0.263847296324
3 9:0.255210563427
4 5:0.337698907881
4 6:0.705329185322
4 7:0.347103197569
4 8:0.249198600528
4 9:0.24866029842
5 6:0.53659707609
5 7:0.225123738691
5 8:0.311857203153
5 9:0.38959381433
6 7:0.490238280465
6 8:0.604080084049
6 9:0.684765879477
7 8:0.305332437241
7 9:0.263928134442
8 9:0.307039861126
</hsp>