sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH7-A2677-A2695
X
>3OH5-A2677-A2695
X
>3OHK-A2677-A2695
X
>3OI1-A2677-A2695
X
>3OHJ-A2677-A2695
X
>3OHZ-A2677-A2695
X
>3OHJ-A181-A229
X
>3OHK-A181-A229
X
>3OH7-A181-A229
X
>3OH5-A181-A229
X
</seq>
<hsp>
0 1:0.0494385563326
0 2:0.143866572229
0 3:0.139908297846
0 4:0.156219230854
0 5:0.16268783654
0 6:0.950876979037
0 7:0.9635955464
0 8:0.999529322637
0 9:1.0
1 2:0.13581385554
1 3:0.116367489227
1 4:0.142206661503
1 5:0.132909416983
1 6:0.939616359645
1 7:0.953142557958
1 8:0.98835517861
1 9:0.9879388226
2 3:0.0902546096029
2 4:0.0323340464247
2 5:0.105162342991
2 6:0.860976937547
2 7:0.873290796471
2 8:0.907668160966
2 9:0.906437091452
3 4:0.0938499944234
3 5:0.0378178534809
3 6:0.900184841292
3 7:0.914669095813
3 8:0.948345489979
3 9:0.946993983777
4 5:0.0979672051943
4 6:0.844239248293
4 7:0.857212504469
4 8:0.892078739693
4 9:0.890253563884
5 6:0.890035303341
5 7:0.905644143283
5 8:0.939576930907
5 9:0.937026205682
6 7:0.050959926176
6 8:0.0890929394947
6 9:0.0915621492193
7 8:0.0652153863447
7 9:0.0861043097648
8 9:0.0458147987012
</hsp>