sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A1826-A1833
X
>3R8T-A1903-A1910
X
>3OHJ-A1827-A1834
X
>3OHK-A1827-A1834
X
>3OH7-A1827-A1834
X
>3OH5-A1827-A1834
X
>3F1H-A1905-A1912
X
>3F1F-A1905-A1912
X
>2J03-A1827-A1834
X
>2J01-A1827-A1834
X
</seq>
<hsp>
0 1:0.170017988842
0 2:0.782459989675
0 3:0.778986713394
0 4:0.769726230456
0 5:0.782142686978
0 6:0.701401787948
0 7:0.680704346958
0 8:0.959606019498
0 9:0.96504619586
1 2:0.851219149208
1 3:0.855421007545
1 4:0.844560691146
1 5:0.848790363712
1 6:0.729908446063
1 7:0.718619269194
1 8:0.991513919853
1 9:1.0
2 3:0.0606948923854
2 4:0.285655480534
2 5:0.277970212394
2 6:0.531300344577
2 7:0.540758807575
2 8:0.806175986826
2 9:0.825994333313
3 4:0.262615645416
3 5:0.266671299285
3 6:0.541773971831
3 7:0.545071259635
3 8:0.815575259619
3 9:0.833843550111
4 5:0.0727724345071
4 6:0.462669295093
4 7:0.4556509822
4 8:0.690349792338
4 9:0.708150330475
5 6:0.462647148818
5 7:0.465548399091
5 8:0.685143027792
5 9:0.705722847561
6 7:0.0799431149646
6 8:0.475869057773
6 9:0.478983298423
7 8:0.457203415183
7 9:0.458231832367
8 9:0.0552621914048
</hsp>