sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-13011-12967
X
>3U5H-53012-52968
X
>3OHD-A953-A949
X
>3OHC-A953-A949
X
>3F1G-A953-A949
X
>2R8S-R65-R69
X
</seq>
<hsp>
0 1:0.030177505009
0 2:0.996154095041
0 3:0.995303077124
0 4:0.969685495944
0 5:0.140252756554
1 2:0.999999058589
1 3:0.999176685657
1 4:0.974958990066
1 5:0.152056234815
2 3:0.00257152590368
2 4:0.080200613602
2 5:0.981618450985
3 4:0.0798037318634
3 5:0.980567842596
4 5:0.946732553393
</hsp>