sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A766-A770
X
>3F1E-A766-A770
X
>3R8N-A786-A790
X
>2J02-A766-A770
X
>2J00-A766-A770
X
>1Y39-D14-D18
X
</seq>
<hsp>
0 1:0.0327190608831
0 2:0.360681791633
0 3:0.349638227818
0 4:0.325105697084
0 5:0.884432622843
1 2:0.352804503365
1 3:0.369270341751
1 4:0.345006637032
1 5:0.88287037035
2 3:0.460287120498
2 4:0.447954250152
2 5:0.882057623694
3 4:0.0398039610444
3 5:1.0
4 5:0.987796840776
</hsp>