ClaRNA

Doublet Group distance statistics: 49367

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
N6 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
C5 A 0, 0.000, 0.001, 0.003, 0.004 max_d=0.004 avg_d=0.001 std_dev=0.002
N1 A 0, 0.000, 0.003, 0.006, 0.008 max_d=0.008 avg_d=0.003 std_dev=0.003
C4 A 0, 0.000, 0.004, 0.007, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.003
N7 A 0, 0.000, 0.003, 0.007, 0.008 max_d=0.008 avg_d=0.003 std_dev=0.004
C8 A 0, -0.001, 0.005, 0.010, 0.012 max_d=0.012 avg_d=0.005 std_dev=0.005
N9 A 0, -0.001, 0.004, 0.010, 0.012 max_d=0.012 avg_d=0.004 std_dev=0.005
N3 A 0, -0.001, 0.005, 0.011, 0.013 max_d=0.013 avg_d=0.005 std_dev=0.006
C2 A 0, -0.001, 0.004, 0.010, 0.012 max_d=0.012 avg_d=0.004 std_dev=0.006
C1' A 0, -0.002, 0.006, 0.015, 0.018 max_d=0.018 avg_d=0.006 std_dev=0.008
C2' B 0, -0.065, 0.185, 0.435, 0.538 max_d=0.538 avg_d=0.185 std_dev=0.250
C2' A 0, -0.149, 0.371, 0.890, 1.105 max_d=1.105 avg_d=0.371 std_dev=0.519
O4' A 0, -0.154, 0.395, 0.944, 1.171 max_d=1.171 avg_d=0.395 std_dev=0.549
O2' B 0, -0.165, 0.435, 1.035, 1.283 max_d=1.283 avg_d=0.435 std_dev=0.600
C4' A 0, -0.196, 0.492, 1.180, 1.464 max_d=1.464 avg_d=0.492 std_dev=0.688
O2' A 0, -0.257, 0.660, 1.577, 1.957 max_d=1.957 avg_d=0.660 std_dev=0.917
C3' A 0, -0.274, 0.681, 1.635, 2.031 max_d=2.031 avg_d=0.681 std_dev=0.954
C3' B 0, -0.299, 0.757, 1.813, 2.250 max_d=2.250 avg_d=0.757 std_dev=1.056
C1' B 0, -0.330, 0.823, 1.975, 2.453 max_d=2.453 avg_d=0.823 std_dev=1.153
O3' A 0, -0.402, 0.999, 2.401, 2.981 max_d=2.981 avg_d=0.999 std_dev=1.401
C5' A 0, -0.432, 1.083, 2.598, 3.225 max_d=3.225 avg_d=1.083 std_dev=1.515
O4' B 0, -0.535, 1.316, 3.168, 3.934 max_d=3.934 avg_d=1.316 std_dev=1.851
C4' B 0, -0.533, 1.321, 3.174, 3.942 max_d=3.942 avg_d=1.321 std_dev=1.854
N1 B 0, -0.545, 1.342, 3.229, 4.011 max_d=4.011 avg_d=1.342 std_dev=1.887
C6 B 0, -0.545, 1.352, 3.249, 4.035 max_d=4.035 avg_d=1.352 std_dev=1.897
O5' B 0, -0.592, 1.475, 3.541, 4.397 max_d=4.397 avg_d=1.475 std_dev=2.067
O3' B 0, -0.614, 1.517, 3.649, 4.532 max_d=4.532 avg_d=1.517 std_dev=2.132
O5' A 0, -0.723, 1.803, 4.330, 5.376 max_d=5.376 avg_d=1.803 std_dev=2.526
OP2 B 0, -0.727, 1.808, 4.344, 5.394 max_d=5.394 avg_d=1.808 std_dev=2.536
P B 0, -0.766, 1.902, 4.571, 5.676 max_d=5.676 avg_d=1.902 std_dev=2.669
C5' B 0, -0.770, 1.903, 4.577, 5.685 max_d=5.685 avg_d=1.903 std_dev=2.674
C5 B 0, -0.773, 1.905, 4.582, 5.691 max_d=5.691 avg_d=1.905 std_dev=2.677
C2 B 0, -0.791, 1.930, 4.650, 5.777 max_d=5.777 avg_d=1.930 std_dev=2.720
O2 B 0, -0.803, 1.957, 4.717, 5.860 max_d=5.860 avg_d=1.957 std_dev=2.760
OP1 B 0, -0.865, 2.139, 5.143, 6.387 max_d=6.387 avg_d=2.139 std_dev=3.004
OP2 A 0, -0.900, 2.218, 5.336, 6.627 max_d=6.627 avg_d=2.218 std_dev=3.118
P A 0, -0.971, 2.404, 5.779, 7.177 max_d=7.177 avg_d=2.404 std_dev=3.375
N3 B 0, -1.031, 2.518, 6.068, 7.538 max_d=7.538 avg_d=2.518 std_dev=3.550
C4 B 0, -1.043, 2.555, 6.153, 7.643 max_d=7.643 avg_d=2.555 std_dev=3.598
OP1 A 0, -1.214, 2.989, 7.192, 8.934 max_d=8.934 avg_d=2.989 std_dev=4.203
O4 B 0, -1.278, 3.129, 7.535, 9.360 max_d=9.360 avg_d=3.129 std_dev=4.406

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.05 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.02 0.25 0.00 0.17 0.51 0.98 0.59
C2 0.01 0.00 0.23 0.06 0.00 0.20 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.51 0.30 0.89 1.74 2.26 1.76
C2' 0.00 0.23 0.00 0.00 0.12 0.00 0.06 0.17 0.11 0.11 0.18 0.22 0.08 0.05 0.01 0.00 0.00 0.01 0.22 0.00 0.56 0.12
C3' 0.01 0.06 0.00 0.00 0.07 0.00 0.19 0.01 0.15 0.35 0.04 0.08 0.21 0.33 0.16 0.01 0.00 0.01 0.30 0.09 0.27 0.09
C4 0.01 0.00 0.12 0.07 0.00 0.13 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.26 0.16 0.59 1.25 1.80 1.30
C4' 0.00 0.20 0.00 0.00 0.13 0.00 0.12 0.00 0.16 0.01 0.19 0.18 0.15 0.06 0.06 0.22 0.00 0.00 0.01 0.11 0.21 0.09
C5 0.00 0.00 0.06 0.19 0.00 0.12 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.08 0.08 0.55 1.28 1.73 1.27
C5' 0.05 0.34 0.17 0.01 0.18 0.00 0.14 0.00 0.23 0.12 0.32 0.29 0.21 0.01 0.02 0.04 0.17 0.00 0.01 0.07 0.07 0.02
C6 0.01 0.00 0.11 0.15 0.00 0.16 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.17 0.14 0.71 1.58 1.99 1.53
C8 0.00 0.00 0.11 0.35 0.00 0.01 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.22 0.16 0.11 0.59 0.96 0.60
N1 0.01 0.00 0.18 0.04 0.00 0.19 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.37 0.24 0.86 1.79 2.23 1.76
N3 0.01 0.00 0.22 0.08 0.00 0.18 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.52 0.30 0.78 1.48 2.06 1.56
N6 0.01 0.00 0.08 0.21 0.00 0.15 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.07 0.10 0.67 1.59 1.89 1.49
N7 0.00 0.00 0.05 0.33 0.00 0.06 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.17 0.08 0.28 0.90 1.25 0.87
N9 0.00 0.00 0.01 0.16 0.00 0.06 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.08 0.00 0.31 0.80 1.30 0.86
O2' 0.02 0.60 0.00 0.01 0.39 0.22 0.35 0.04 0.45 0.04 0.56 0.54 0.42 0.17 0.16 0.00 0.00 0.17 0.00 0.11 0.73 0.30
O3' 0.25 0.51 0.00 0.00 0.26 0.00 0.08 0.17 0.17 0.22 0.37 0.52 0.07 0.17 0.08 0.00 0.00 0.17 0.23 0.12 0.06 0.19
O4' 0.00 0.30 0.01 0.01 0.16 0.00 0.08 0.00 0.14 0.16 0.24 0.30 0.10 0.08 0.00 0.17 0.17 0.00 0.35 0.60 0.86 0.66
O5' 0.17 0.89 0.22 0.30 0.59 0.01 0.55 0.01 0.71 0.11 0.86 0.78 0.67 0.28 0.31 0.00 0.23 0.35 0.00 0.00 0.00 0.00
OP1 0.51 1.74 0.00 0.09 1.25 0.11 1.28 0.07 1.58 0.59 1.79 1.48 1.59 0.90 0.80 0.11 0.12 0.60 0.00 0.00 0.00 0.00
OP2 0.98 2.26 0.56 0.27 1.80 0.21 1.73 0.07 1.99 0.96 2.23 2.06 1.89 1.25 1.30 0.73 0.06 0.86 0.00 0.00 0.00 0.00
P 0.59 1.76 0.12 0.09 1.30 0.09 1.27 0.02 1.53 0.60 1.76 1.56 1.49 0.87 0.86 0.30 0.19 0.66 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.33 0.30 0.09 0.53 0.40 1.10 0.12 1.38 0.07 0.03 0.49 0.41 0.13 0.62 0.55 0.95 1.02 0.98 1.26 1.20
C2 0.29 0.75 0.03 0.63 0.80 1.39 0.38 1.70 0.09 0.20 0.99 1.01 0.09 0.75 0.97 1.16 1.22 1.22 1.33 1.36
C2' 0.29 0.24 0.05 0.33 0.39 0.94 0.16 1.22 0.02 0.02 0.44 0.30 0.00 0.35 0.53 0.88 0.86 0.81 1.07 1.02
C3' 0.50 0.12 0.28 0.65 0.29 1.19 0.02 1.43 0.20 0.19 0.34 0.18 0.38 0.76 0.47 1.04 1.06 0.99 1.21 1.19
C4 0.35 0.29 0.07 0.50 0.35 1.09 0.09 1.33 0.10 0.05 0.45 0.43 0.10 0.56 0.48 0.98 0.97 0.91 1.14 1.11
C4' 0.46 0.20 0.33 0.78 0.32 1.25 0.01 1.53 0.20 0.15 0.41 0.32 0.41 0.95 0.49 1.02 1.18 1.09 1.34 1.33
C5 0.41 0.00 0.09 0.39 0.04 0.88 0.12 1.04 0.23 0.21 0.10 0.10 0.07 0.38 0.11 0.87 0.78 0.66 0.91 0.86
C5' 0.59 0.03 0.51 0.93 0.11 1.33 0.18 1.57 0.38 0.31 0.21 0.15 0.58 1.12 0.27 1.08 1.27 1.11 1.33 1.36
C6 0.43 0.06 0.07 0.40 0.07 0.92 0.10 1.05 0.23 0.19 0.16 0.19 0.04 0.37 0.15 0.93 0.79 0.67 0.85 0.84
C8 0.39 0.13 0.10 0.35 0.09 0.77 0.20 0.93 0.28 0.27 0.05 0.09 0.09 0.32 0.03 0.77 0.71 0.57 0.89 0.81
N1 0.35 0.52 0.03 0.56 0.51 1.26 0.18 1.46 0.03 0.06 0.68 0.78 0.06 0.60 0.63 1.14 1.06 1.00 1.10 1.13
N3 0.30 0.62 0.05 0.61 0.70 1.30 0.32 1.63 0.05 0.13 0.86 0.83 0.11 0.73 0.88 1.09 1.17 1.17 1.34 1.34
N6 0.50 0.32 0.09 0.23 0.29 0.59 0.35 0.65 0.40 0.41 0.27 0.27 0.04 0.09 0.26 0.73 0.53 0.37 0.54 0.53
N7 0.42 0.27 0.11 0.29 0.24 0.66 0.30 0.77 0.34 0.34 0.22 0.24 0.06 0.21 0.20 0.72 0.61 0.44 0.75 0.68
N9 0.36 0.16 0.09 0.46 0.23 0.99 0.01 1.22 0.15 0.11 0.31 0.26 0.11 0.51 0.34 0.90 0.91 0.83 1.11 1.05
O2' 0.08 0.69 0.47 0.05 0.88 0.67 0.62 0.99 0.40 0.40 0.93 0.74 0.40 0.04 1.05 0.61 0.58 0.58 0.80 0.77
O3' 0.09 0.60 0.10 0.30 0.84 0.84 0.54 1.08 0.28 0.27 0.88 0.65 0.06 0.45 1.05 0.66 0.67 0.65 0.87 0.83
O4' 0.42 0.26 0.29 0.76 0.34 1.25 0.03 1.53 0.18 0.11 0.46 0.41 0.34 0.93 0.50 1.00 1.18 1.11 1.39 1.36
O5' 1.15 0.40 1.11 1.61 0.32 2.02 0.68 2.32 0.92 0.82 0.18 0.23 1.17 1.85 0.12 1.69 1.99 1.83 1.98 2.08
OP1 2.19 1.43 2.27 2.77 1.41 3.03 1.81 3.29 2.03 1.88 1.23 1.21 2.32 3.06 1.22 2.64 3.04 2.81 2.88 3.05
OP2 2.33 1.62 2.38 2.87 1.60 3.17 1.96 3.42 2.17 2.04 1.43 1.41 2.39 3.10 1.42 2.81 3.16 2.98 3.23 3.26
P 2.02 1.23 2.07 2.60 1.19 2.93 1.60 3.22 1.83 1.69 1.02 1.01 2.10 2.88 0.99 2.53 2.93 2.75 2.89 3.01

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.03 0.09 0.19 0.07
C2 0.00 0.00 0.12 0.11 0.00 0.01 0.00 0.03 0.00 0.00 0.00 0.00 0.07 0.13 0.00 0.09 0.06 0.39 0.40 0.16
C2' 0.00 0.12 0.00 0.00 0.05 0.00 0.02 0.00 0.06 0.03 0.11 0.17 0.00 0.00 0.06 0.00 0.03 0.06 0.30 0.12
C3' 0.01 0.11 0.00 0.00 0.12 0.00 0.07 0.01 0.04 0.06 0.13 0.12 0.01 0.00 0.13 0.00 0.05 0.23 0.54 0.24
C4 0.00 0.00 0.05 0.12 0.00 0.06 0.00 0.08 0.01 0.00 0.00 0.00 0.01 0.14 0.00 0.00 0.17 0.59 0.30 0.08
C4' 0.00 0.01 0.00 0.00 0.06 0.00 0.10 0.00 0.10 0.03 0.01 0.06 0.03 0.01 0.05 0.00 0.00 0.29 0.01 0.05
C5 0.00 0.00 0.02 0.07 0.00 0.10 0.00 0.16 0.00 0.00 0.00 0.00 0.04 0.08 0.00 0.07 0.23 0.52 0.11 0.03
C5' 0.01 0.03 0.00 0.01 0.08 0.00 0.16 0.00 0.16 0.04 0.00 0.09 0.03 0.01 0.07 0.01 0.01 0.40 0.10 0.01
C6 0.00 0.00 0.06 0.04 0.01 0.10 0.00 0.16 0.00 0.00 0.01 0.00 0.06 0.03 0.01 0.10 0.21 0.36 0.08 0.04
N1 0.00 0.00 0.03 0.06 0.00 0.03 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.10 0.29 0.25 0.08
N3 0.00 0.00 0.11 0.13 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.05 0.15 0.00 0.06 0.10 0.52 0.41 0.16
O2 0.00 0.00 0.17 0.12 0.00 0.06 0.00 0.09 0.00 0.00 0.00 0.00 0.12 0.14 0.00 0.14 0.01 0.35 0.46 0.21
O2' 0.00 0.07 0.00 0.01 0.01 0.03 0.04 0.03 0.06 0.00 0.05 0.12 0.00 0.01 0.02 0.03 0.00 0.22 0.30 0.15
O3' 0.01 0.13 0.00 0.00 0.14 0.01 0.08 0.01 0.03 0.06 0.15 0.14 0.01 0.00 0.16 0.01 0.06 0.48 0.84 0.39
O4 0.00 0.00 0.06 0.13 0.00 0.05 0.00 0.07 0.01 0.00 0.00 0.00 0.02 0.16 0.00 0.01 0.17 0.68 0.32 0.09
O4' 0.00 0.09 0.00 0.00 0.00 0.00 0.07 0.01 0.10 0.00 0.06 0.14 0.03 0.01 0.01 0.00 0.05 0.01 0.43 0.16
O5' 0.03 0.06 0.03 0.05 0.17 0.00 0.23 0.01 0.21 0.10 0.10 0.01 0.00 0.06 0.17 0.05 0.00 0.01 0.00 0.00
OP1 0.09 0.39 0.06 0.23 0.59 0.29 0.52 0.40 0.36 0.29 0.52 0.35 0.22 0.48 0.68 0.01 0.01 0.00 0.00 0.00
OP2 0.19 0.40 0.30 0.54 0.30 0.01 0.11 0.10 0.08 0.25 0.41 0.46 0.30 0.84 0.32 0.43 0.00 0.00 0.00 0.00
P 0.07 0.16 0.12 0.24 0.08 0.05 0.03 0.01 0.04 0.08 0.16 0.21 0.15 0.39 0.09 0.16 0.00 0.00 0.00 0.00