sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2GDI-X61-X11
X
>3D2G-A58-A12
X
>3D2V-A58-A12
X
>2GDI-Y61-Y11
X
>3D2X-A58-A12
X
>3D2V-B58-B12
X
>3D2G-B58-B12
X
>3D2X-B58-B12
X
>2CKY-B58-B12
X
>2CKY-A58-A12
X
</seq>
<hsp>
0 1:0.581611357289
0 2:0.433580732988
0 3:0.442164568265
0 4:0.499649259759
0 5:0.610447072226
0 6:0.597854832899
0 7:0.944072295159
0 8:0.819379156269
0 9:1.0
1 2:0.442908044981
1 3:0.625683635337
1 4:0.500482912778
1 5:0.573404580369
1 6:0.523586462737
1 7:0.696031891217
1 8:0.823149150341
1 9:0.809031260886
2 3:0.243406720918
2 4:0.345093836495
2 5:0.237146777642
2 6:0.310873799317
2 7:0.539587993096
2 8:0.522076925256
2 9:0.57868865287
3 4:0.50131602904
3 5:0.316692109603
3 6:0.411024430841
3 7:0.669204054945
3 8:0.496167030024
3 9:0.629014510831
4 5:0.38283342454
4 6:0.389253362807
4 7:0.626048053338
4 8:0.73121217981
4 9:0.759767484719
5 6:0.23763545071
5 7:0.478794354435
5 8:0.538403020852
5 9:0.457060084118
6 7:0.568962873288
6 8:0.665367823315
6 9:0.575771700731
7 8:0.505350675772
7 9:0.313626917162
8 9:0.470737368406
</hsp>