sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1654-X1554
X
>3KNH-A1332-A1200
X
>3R8N-A1362-A1231
X
>2UUA-A1341-A1209
X
>1N32-A1341-A1209
X
>1FJG-A1341-A1209
X
</seq>
<hsp>
0 1:0.883074644349
0 2:0.690989331942
0 3:0.846542523802
0 4:0.999997838545
0 5:0.913615938743
1 2:0.872464246859
1 3:0.871371245641
1 4:0.783107917234
1 5:0.627680196978
2 3:0.310896141222
2 4:0.462561102475
2 5:0.48587646233
3 4:0.337631918607
3 5:0.41345770305
4 5:0.250896181
</hsp>