sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2VQE-A1383-A1382
X
>3CCJ-917-916
X
>3CCE-0359-0358
X
>3I56-917-916
X
>3OL9-B5-B4
X
>1YHQ-01554-01553
X
>2UUB-A1383-A1382
X
>3G6E-02427-02426
X
>3CCL-01554-01553
X
>1YJW-02427-02426
X
>1FFK-02380-02379
X
>3OHD-A84-A83
X
</seq>
<hsp>
0 1:0.58819891568
0 2:0.742022837012
0 3:0.524735587608
0 4:0.683546102753
0 5:0.42568200284
0 6:0.28875821588
0 7:0.434755988441
0 8:0.425541992061
0 9:0.460452763181
0 10:0.568234914913
0 11:1.0
1 2:0.521927628587
1 3:0.468239930915
1 4:0.583077119496
1 5:0.354794084719
1 6:0.476797178565
1 7:0.444360461217
1 8:0.360241480496
1 9:0.465851512876
1 10:0.524606349921
1 11:0.797125248029
2 3:0.34473438566
2 4:0.226859886
2 5:0.680378140848
2 6:0.665566292563
2 7:0.471290689584
2 8:0.617151061627
2 9:0.485184669119
2 10:0.390657944717
2 11:0.686366619657
3 4:0.286273326219
3 5:0.500140133074
3 6:0.468325559336
3 7:0.254473268865
3 8:0.44746050375
3 9:0.301340098815
3 10:0.290122520447
3 11:0.808593852464
4 5:0.64309080371
4 6:0.613570860363
4 7:0.471772854842
4 8:0.579581114156
4 9:0.508878229739
4 10:0.438895777535
4 11:0.811636116673
5 6:0.215905210927
5 7:0.432820241795
5 8:0.0958413509351
5 9:0.464267538559
5 10:0.566527491058
5 11:0.870091624287
6 7:0.364171187112
6 8:0.185965680233
6 9:0.384435614145
6 10:0.48439314092
6 11:0.827689289913
7 8:0.37723245049
7 9:0.0851901586139
7 10:0.200650254795
7 11:0.732824293994
8 9:0.408492825435
8 10:0.500048042411
8 11:0.807273401548
9 10:0.158103633403
9 11:0.672378059317
10 11:0.590164455609
</hsp>