sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2G5Q-B3-B2
X
>3ADD-C52-C51
X
>1VQN-0962-0961
X
>1FFK-0961-0960
X
>1KD1-A962-A961
X
>1VQ4-0962-0961
X
>2OTL-0962-0961
X
>2ET5-A3-A2
X
>3CC7-0962-0961
X
</seq>
<hsp>
0 1:0.951303671109
0 2:0.478439291651
0 3:0.385663938508
0 4:0.359618450471
0 5:0.313207424986
0 6:0.236655455331
0 7:0.300097036411
0 8:0.293106980433
1 2:0.977244093777
1 3:1.0
1 4:0.971005262721
1 5:0.856309395415
1 6:0.813335719648
1 7:0.780062087377
1 8:0.784653580853
2 3:0.232917738211
2 4:0.170143391595
2 5:0.431686013387
2 6:0.440396989583
2 7:0.466629022336
2 8:0.350790852671
3 4:0.128066499474
3 5:0.341458371914
3 6:0.36913075003
3 7:0.466989352203
3 8:0.314549365535
4 5:0.300167786684
4 6:0.322608687865
4 7:0.396457204758
4 8:0.250432602274
5 6:0.135189007384
5 7:0.256529925552
5 8:0.157490620362
6 7:0.211554656619
6 8:0.124414938637
7 8:0.231265497936
</hsp>