sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YHQ-02613-02612
X
>1FFK-02565-02564
X
>3F1F-A402-A401
X
>1VQ7-02122-02121
X
>1VQ7-0198-0197
X
>2J02-A583-A582
X
>3CXC-0198-0197
X
</seq>
<hsp>
0 1:0.199037708107
0 2:0.47011558549
0 3:0.758615354767
0 4:0.81567661463
0 5:1.0
0 6:0.862366255002
1 2:0.468067610671
1 3:0.723606433889
1 4:0.792812442807
1 5:0.969916512468
1 6:0.830081611585
2 3:0.424022249025
2 4:0.443664315123
2 5:0.597797797311
2 6:0.469894262732
3 4:0.233036976104
3 5:0.353701666189
3 6:0.27319333848
4 5:0.270688561424
4 6:0.114941199274
5 6:0.225479722128
</hsp>