sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A1383-A1382
X
>3OHJ-A1629-A1628
X
>3OHK-A1629-A1628
X
>1FFK-01677-01676
X
>3I2R-B3-B2
X
>3GS1-B3-B2
X
</seq>
<hsp>
0 1:0.669699435453
0 2:0.610065007976
0 3:0.7509422448
0 4:0.999998468793
0 5:0.899606903182
1 2:0.090806822495
1 3:0.895583823065
1 4:0.935654226859
1 5:0.771247686219
2 3:0.83502133009
2 4:0.8927928286
2 5:0.734406556281
3 4:0.628094233693
3 5:0.698626594837
4 5:0.339580467598
</hsp>