sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OVB-C27-C26
X
>3CC4-01783-01782
X
>3NMU-D11-D10
X
>3OHJ-A2012-A2011
X
>1VQM-0160-0159
X
>3R9X-C16-C15
X
>3CCJ-0919-0918
X
>3CCJ-01292-01291
X
>3R8S-A2864-A2863
X
>2ZJR-X65-X64
X
</seq>
<hsp>
0 1:0.203100070063
0 2:0.330736321773
0 3:0.415998658259
0 4:0.845763429112
0 5:0.695704906652
0 6:0.578181004326
0 7:0.792401237146
0 8:0.946472686603
0 9:1.0
1 2:0.287828999121
1 3:0.319110126424
1 4:0.784507942421
1 5:0.648133977376
1 6:0.517775289866
1 7:0.665831143863
1 8:0.853791330978
1 9:0.898027784708
2 3:0.442205695722
2 4:0.842553946334
2 5:0.630692822825
2 6:0.629537180719
2 7:0.730601874131
2 8:0.896364643933
2 9:0.960722571304
3 4:0.81655422138
3 5:0.691382186218
3 6:0.445896567824
3 7:0.494694425485
3 8:0.760430875842
3 9:0.789793644643
4 5:0.378753237011
4 6:0.639660095835
4 7:0.882051382127
4 8:0.457205292295
4 9:0.568365181147
5 6:0.540685052432
5 7:0.73535765454
5 8:0.554565690614
5 9:0.559289877252
6 7:0.406035858624
6 8:0.506122892421
6 9:0.505445203576
7 8:0.630703129535
7 9:0.538550120952
8 9:0.308158884854
</hsp>