sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-01399-01398
X
>3G71-02176-02175
X
>1YJ9-02024-02023
X
>2QA4-0967-0966
X
>3KNK-A2427-A2426
X
>3CME-0968-0967
X
>3F1G-Y24-Y23
X
>3F1E-Y24-Y23
X
</seq>
<hsp>
0 1:0.413301682473
0 2:0.430235424676
0 3:0.820464888658
0 4:0.600465271368
0 5:0.85148904238
0 6:0.932165733974
0 7:0.918804234505
1 2:0.666714984815
1 3:0.867549152973
1 4:0.581125437164
1 5:1.0
1 6:0.826382484197
1 7:0.811995189473
2 3:0.725089896913
2 4:0.859014845114
2 5:0.911276622715
2 6:0.993820138639
2 7:0.981860570984
3 4:0.7586273307
3 5:0.600471177507
3 6:0.530943976584
3 7:0.519630428038
4 5:0.603022334792
4 6:0.592635379069
4 7:0.587008308109
5 6:0.616706449409
5 7:0.612935552303
6 7:0.041651794302
</hsp>