sequences=20
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-01803-01802
X
>2J00-V60-V59
X
>1VQ7-0274-0273
X
>3R8O-A1305-A1304
X
>3CCL-02353-02352
X
>1VQ5-0166-0165
X
>1U0B-A30-A29
X
>3CCQ-0274-0273
X
>1Q86-A166-A165
X
>1K8A-A274-A273
X
>3CC4-0166-0165
X
>3PDR-X66-X65
X
>1VQ5-0274-0273
X
>1Q82-A166-A165
X
>1VQ4-01962-01961
X
>3CCM-01962-01961
X
>1VQN-0274-0273
X
>1YIT-0274-0273
X
>3CCV-02353-02352
X
>1K8A-A1962-A1961
X
</seq>
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