sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A914-A913
X
>1YJW-02355-02354
X
>3CC7-02355-02354
X
>3CCM-02529-02528
X
>1FFK-02308-02307
X
>1ZJW-B57-B56
X
>3U5D-11593-11592
X
>1Q82-A1327-A1326
X
>1VQO-01327-01326
X
>1VQ7-01327-01326
X
>1VQN-0555-0554
X
>3CCJ-02355-02354
X
>1KD1-A555-A554
X
>3CC4-0555-0554
X
>3CMA-9105-9104
X
>3G71-0555-0554
X
</seq>
<hsp>
0 1:0.572691480643
0 2:0.41218237548
0 3:0.35870940906
0 4:0.607783190543
0 5:0.500089668699
0 6:0.628949907576
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0 15:0.772477689985
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1 10:0.935715296379
1 11:0.409986305771
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1 14:0.501844215525
1 15:0.685591758478
2 3:0.484063371497
2 4:0.22547705603
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7 10:1.0
7 11:0.506833864558
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9 10:0.873893160758
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12 13:0.141188211049
12 14:0.226935488263
12 15:0.145725600282
13 14:0.303700335159
13 15:0.125283049373
14 15:0.236022140108
</hsp>