sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N8R-A2276-A2275
X
>2J02-A1353-A1352
X
>3KNH-A12-A11
X
>1YHQ-01256-01255
X
>1QVG-01268-01267
X
>3R8S-A2470-A2469
X
>3U5D-1700-1699
X
>3CC7-01256-01255
X
>3KNI-A1218-A1217
X
>3U5D-1567-1566
X
</seq>
<hsp>
0 1:0.437069051653
0 2:0.786547318815
0 3:0.671905848536
0 4:0.327978554776
0 5:0.596282893345
0 6:0.419129708016
0 7:0.654763830208
0 8:0.584840416239
0 9:0.861521995196
1 2:1.0
1 3:0.852254638827
1 4:0.565615444875
1 5:0.510365385705
1 6:0.483443540697
1 7:0.829161882004
1 8:0.570281257383
1 9:0.865976418444
2 3:0.389104652809
2 4:0.6062870885
2 5:0.749121488344
2 6:0.689087173887
2 7:0.362960408306
2 8:0.585328431519
2 9:0.641255895273
3 4:0.459704147879
3 5:0.561155158166
3 6:0.579872007061
3 7:0.165022427118
3 8:0.563783400974
3 9:0.625545492789
4 5:0.484345456425
4 6:0.440149616704
4 7:0.41200518122
4 8:0.524671078652
4 9:0.761291744375
5 6:0.585185570467
5 7:0.547141726581
5 8:0.431861852263
5 9:0.701156855012
6 7:0.569452728378
6 8:0.40725390948
6 9:0.529655709967
7 8:0.557085469223
7 9:0.625430098887
8 9:0.42920436327
</hsp>