sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-2898-2897
X
>3G6E-01084-01083
X
>1YI2-01084-01083
X
>2DU4-C37-C36
X
>3CCV-01962-01961
X
>1QVG-01000-0999
X
>1VQ6-01000-0999
X
>3CMA-01000-0999
X
>1YI2-01000-0999
X
>1S72-01000-0999
X
</seq>
<hsp>
0 1:0.751642352026
0 2:0.755252064482
0 3:0.945309984401
0 4:1.0
0 5:0.845511418808
0 6:0.984170964498
0 7:0.914121654136
0 8:0.946178761436
0 9:0.965828059877
1 2:0.0663202549812
1 3:0.445989532846
1 4:0.663439146501
1 5:0.530015574782
1 6:0.665514236302
1 7:0.550662490247
1 8:0.675187573681
1 9:0.645007683352
2 3:0.447798551146
2 4:0.645354444216
2 5:0.523827811718
2 6:0.651679658508
2 7:0.54169205989
2 8:0.667288838855
2 9:0.6415728873
3 4:0.669981221889
3 5:0.46730760983
3 6:0.545524402957
3 7:0.542720697255
3 8:0.570396158218
3 9:0.528596052764
4 5:0.408447461391
4 6:0.265961768396
4 7:0.272136911021
4 8:0.325257898956
4 9:0.353700461393
5 6:0.233091687235
5 7:0.20796678845
5 8:0.190460676146
5 9:0.175622658202
6 7:0.19209578926
6 8:0.107937757191
6 9:0.136956167823
7 8:0.198628397801
7 9:0.18501773899
8 9:0.0822342768985
</hsp>