sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCJ-0661-0659
X
>1AQ4-S8-S6
X
>1AQ3-R8-R6
X
>1QVG-0661-0659
X
>1KD1-A661-A659
X
>3G6E-0661-0659
X
>3I56-0661-0659
X
>1VQ7-0661-0659
X
>2QEX-0661-0659
X
>1VQP-0661-0659
X
</seq>
<hsp>
0 1:0.999993613864
0 2:0.851431838136
0 3:0.640317013156
0 4:0.678811172365
0 5:0.727288145283
0 6:0.748654386543
0 7:0.756025847996
0 8:0.596425738453
0 9:0.706603620159
1 2:0.381613999212
1 3:0.977214707606
1 4:0.888151217492
1 5:0.760286244832
1 6:0.801807702832
1 7:0.794110942254
1 8:0.816365156889
1 9:0.836369182092
2 3:0.783827687948
2 4:0.670872530918
2 5:0.553414418886
2 6:0.551729611007
2 7:0.597134011602
2 8:0.603456545423
2 9:0.669387350884
3 4:0.179617463735
3 5:0.380315254416
3 6:0.352401693231
3 7:0.373781586094
3 8:0.229090109584
3 9:0.262308435936
4 5:0.328885189384
4 6:0.280825734625
4 7:0.283649315316
4 8:0.173355985916
4 9:0.18130045304
5 6:0.122686047575
5 7:0.161976060216
5 8:0.230216497597
5 9:0.293762356647
6 7:0.199777460372
6 8:0.218897944118
6 9:0.304211270627
7 8:0.216610926424
7 9:0.191464806927
8 9:0.187451919571
</hsp>