sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2YDH-A17-A16
X
>3U5F-6101-6100
X
>1VQ9-098-097
X
>1K9M-A98-A97
X
>1VQM-098-097
X
>1S72-098-097
X
>1VQ8-098-097
X
>1VQL-098-097
X
>1YHQ-098-097
X
>2OTL-098-097
X
>3G71-098-097
X
</seq>
<hsp>
0 1:1.0
0 2:0.813676859066
0 3:0.846075429075
0 4:0.811410516206
0 5:0.773421185365
0 6:0.792111535682
0 7:0.780588315955
0 8:0.862705265538
0 9:0.803008891218
0 10:0.891776744826
1 2:0.634280147449
1 3:0.568013216645
1 4:0.590352761866
1 5:0.510862029007
1 6:0.576610416532
1 7:0.585998605105
1 8:0.490755876152
1 9:0.551534762952
1 10:0.571366914815
2 3:0.169557341595
2 4:0.143515000336
2 5:0.211202622013
2 6:0.140172389805
2 7:0.146573347012
2 8:0.202744221757
2 9:0.194182153333
2 10:0.272999618511
3 4:0.154941038678
3 5:0.127416049228
3 6:0.122252393118
3 7:0.128767543314
3 8:0.116637892303
3 9:0.0839524682958
3 10:0.129705285196
4 5:0.142385226885
4 6:0.055467646198
4 7:0.073471620682
4 8:0.1581866277
4 9:0.172676663398
4 10:0.245361487784
5 6:0.101306013182
5 7:0.111731659163
5 8:0.111270904574
5 9:0.106845913318
5 10:0.188885014139
6 7:0.0443991480198
6 8:0.13281410961
6 9:0.123355001619
6 10:0.207184618066
7 8:0.138434782353
7 9:0.122767481033
7 10:0.204040743389
8 9:0.124318183774
8 10:0.161279608875
9 10:0.113384185041
</hsp>