sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1M90-A122-A121
X
>1S72-0122-0121
X
>3CCM-0122-0121
X
>3CCM-01699-01698
X
>1FFK-0121-0120
X
>1JJ2-01699-01698
X
>3G71-01699-01698
X
>3CD6-01699-01698
X
>3PEY-B2-B1
X
</seq>
<hsp>
0 1:0.384668627316
0 2:0.406949893381
0 3:0.853533186477
0 4:0.48445354831
0 5:0.658804288787
0 6:0.828591126395
0 7:0.548561635614
0 8:0.801417063734
1 2:0.223208453402
1 3:0.561304405117
1 4:0.209618852528
1 5:0.538002929217
1 6:0.55522850987
1 7:0.47456045201
1 8:0.807021090184
2 3:0.710561217625
2 4:0.305359871348
2 5:0.496524650791
2 6:0.567922224364
2 7:0.465044876746
2 8:0.945035667847
3 4:0.447495539328
3 5:0.633243818821
3 6:0.433083868636
3 7:0.650902494198
3 8:0.849902989799
4 5:0.421616959409
4 6:0.394314746062
4 7:0.328589721287
4 8:0.764783881868
5 6:0.380637463895
5 7:0.341472973302
5 8:0.998839130605
6 7:0.459007753906
6 8:1.0
7 8:0.756033303741
</hsp>