sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQN-0721-0720
X
>3CPW-0721-0720
X
>1VQL-0721-0720
X
>2DU3-D21-D20
X
>3G71-0721-0720
X
>2GIC-R15-R13
X
>1YI2-0721-0720
X
</seq>
<hsp>
0 1:0.475463209264
0 2:0.108593874005
0 3:0.947337391929
0 4:0.323624072628
0 5:0.999997376711
0 6:0.451851253231
1 2:0.496971611002
1 3:0.718853145226
1 4:0.223951920382
1 5:0.688448110524
1 6:0.362894945456
2 3:0.921729577562
2 4:0.345342619233
2 5:0.99261655858
2 6:0.43408397268
3 4:0.800881229184
3 5:0.38819538999
3 6:0.742400286584
4 5:0.793449187644
4 6:0.291797483281
5 6:0.74638714519
</hsp>