sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3TRA-A9-A44
X
>3AKZ-F9-F43
X
>3OH7-A2080-A962
X
>2TRA-A9-A44
X
>3OH5-A2080-A962
X
>2J03-A2127-A962
X
>2J01-A2127-A962
X
</seq>
<hsp>
0 1:1.0
0 2:0.93616906647
0 3:0.237653148134
0 4:0.946460442677
0 5:0.927316524312
0 6:0.893884753278
1 2:0.593574023843
1 3:0.81179928382
1 4:0.598884308283
1 5:0.656249810648
1 6:0.647424500948
2 3:0.753922770835
2 4:0.0538489613746
2 5:0.260885041779
2 6:0.2594572619
3 4:0.766943020474
3 5:0.764826618273
3 6:0.731599205712
4 5:0.240451714821
4 6:0.241934550542
5 6:0.039556232175
</hsp>