sequences=13
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1111-A1091
X
>3F1F-A1111-A1091
X
>1YJN-01155-01135
X
>3CD6-01155-01135
X
>2ZJR-Y17-Y109
X
>1Y39-D41-D21
X
>1QA6-D41-D21
X
>1QA6-C41-C21
X
>1MMS-D41-D21
X
>1HC8-D41-D21
X
>1Y39-C41-C21
X
>1MMS-C41-C21
X
>1HC8-C41-C21
X
</seq>
<hsp>
0 1:0.0128238547732
0 2:0.947978844262
0 3:0.648469324108
0 4:0.723651130888
0 5:0.984163432703
0 6:0.94598655765
0 7:0.945841197757
0 8:0.890954621751
0 9:0.805891550456
0 10:1.0
0 11:0.858736272748
0 12:0.962225282791
1 2:0.944475612509
1 3:0.643025931807
1 4:0.715331709871
1 5:0.980509632873
1 6:0.940515761678
1 7:0.940368181646
1 8:0.88699917031
1 9:0.800285865926
1 10:0.996501246864
1 11:0.854093389431
1 12:0.957125643574
2 3:0.403175078392
2 4:0.999051573167
2 5:0.478529737164
2 6:0.533775220166
2 7:0.533932499756
2 8:0.576077572206
2 9:0.452811510659
2 10:0.689951091255
2 11:0.585888586203
2 12:0.563824829945
3 4:0.635593115511
3 5:0.47205112278
3 6:0.458102299606
3 7:0.458146883541
3 8:0.42638165526
3 9:0.324973399064
3 10:0.619832979527
3 11:0.400288867195
3 12:0.501775576668
4 5:0.854855059521
4 6:0.700267622798
4 7:0.700239733006
4 8:0.725992681355
4 9:0.711178620176
4 10:0.827225344462
4 11:0.663914959551
4 12:0.765363544918
5 6:0.313148417604
5 7:0.312868923745
5 8:0.222045055499
5 9:0.295556168857
5 10:0.280907999633
5 11:0.255220217804
5 12:0.224395196865
6 7:0.000788173506453
6 8:0.366768348242
6 9:0.311632464437
6 10:0.331135872528
6 11:0.33768702405
6 12:0.192837893136
7 8:0.366418060346
7 9:0.311451938506
7 10:0.330641501631
7 11:0.337348062377
7 12:0.192423421332
8 9:0.320785586486
8 10:0.324094453801
8 11:0.0740119947187
8 12:0.311884384395
9 10:0.432942492283
9 11:0.287736584516
9 12:0.247044425149
10 11:0.334895128762
10 12:0.241084368993
11 12:0.292655200915
</hsp>