sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1AQ3-S11-S3
X
>1FFY-T31-T40
X
>1QU2-T31-T40
X
>1KUQ-B42-B25
X
>1ZDK-S14-S6
X
>2QA4-0704-0698
X
>1GID-A100-A16
X
>2NPY-A11-B2
X
>2IZ9-S12-S4
X
>6MSF-R3-R12
X
</seq>
<hsp>
0 1:0.50750585817
0 2:0.50750585817
0 3:0.879938577857
0 4:0.616243060135
0 5:0.772167398032
0 6:0.732017086567
0 7:0.991443456939
0 8:0.615959275292
0 9:0.824084914279
1 2:0.0
1 3:0.752964516226
1 4:0.346117119658
1 5:0.831399809933
1 6:0.514113243426
1 7:0.664668143542
1 8:0.418011015599
1 9:0.553266009434
2 3:0.752964516226
2 4:0.346117119658
2 5:0.831399809933
2 6:0.514113243426
2 7:0.664668143542
2 8:0.418011015599
2 9:0.553266009434
3 4:1.0
3 5:0.906776065607
3 6:0.828425805187
3 7:0.724400465766
3 8:0.592125287272
3 9:0.585024199664
4 5:0.981510114801
4 6:0.427093852001
4 7:0.767451618527
4 8:0.494625491214
4 9:0.681697736697
5 6:0.920211112758
5 7:0.961879530957
5 8:0.78059093875
5 9:0.72253983591
6 7:0.766011983391
6 8:0.292727089269
6 9:0.549976042298
7 8:0.615459188264
7 9:0.462472205053
8 9:0.351079292644
</hsp>