sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCR-02664-02665
X
>2VQF-A1507-A671
X
>1FFK-02616-02617
X
>2VQE-A1507-A671
X
>1VQL-02664-02665
X
>1VQM-02664-02665
X
>3CCM-02664-02665
X
>1VQN-02664-02665
X
>1VQK-02664-02665
X
>1VQ8-02664-02665
X
</seq>
<hsp>
0 1:0.999991509331
0 2:0.789978324524
0 3:0.796437692031
0 4:0.845678013894
0 5:0.924161577106
0 6:0.955125106107
0 7:0.920474833764
0 8:0.840026817495
0 9:0.897034638179
1 2:0.794730775642
1 3:0.330157988387
1 4:0.805242559501
1 5:0.842210423848
1 6:0.764104220365
1 7:0.759731507937
1 8:0.684061033124
1 9:0.693282720109
2 3:0.741769676916
2 4:0.819033760106
2 5:0.853274768625
2 6:0.941706415631
2 7:0.796411869471
2 8:0.730154932276
2 9:0.806671353785
3 4:0.589341177892
3 5:0.676961939195
3 6:0.546378380453
3 7:0.596128337897
3 8:0.513347946954
3 9:0.526137302022
4 5:0.168615590969
4 6:0.342501730964
4 7:0.20001232086
4 8:0.332249406849
4 9:0.303567629488
5 6:0.411503542975
5 7:0.173976448377
5 8:0.385282652017
5 9:0.32727310167
6 7:0.292651953796
6 8:0.280417138249
6 9:0.202524528969
7 8:0.241283761806
7 9:0.171004074561
8 9:0.136269838563
</hsp>