sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJ9-0259-0261
X
>1Q86-A259-A261
X
>1VQO-0259-0261
X
>3CXC-0259-0261
X
>1VQP-0259-0261
X
>1VQN-0259-0261
X
>2OTL-0259-0261
X
>1VQ8-0259-0261
X
>1VQ9-0259-0261
X
</seq>
<hsp>
0 1:0.395990901408
0 2:0.571099645084
0 3:0.650914758593
0 4:0.67078178338
0 5:0.5702213907
0 6:0.345871737578
0 7:0.999990957525
0 8:0.884466094749
1 2:0.655294734067
1 3:0.421739927855
1 4:0.496391021611
1 5:0.487421149963
1 6:0.314834801142
1 7:0.809226510233
1 8:0.749480362658
2 3:0.756835960124
2 4:0.452979665056
2 5:0.328062215545
2 6:0.6284268794
2 7:0.939363235448
2 8:0.628819754931
3 4:0.544038840039
3 5:0.611921618859
3 6:0.512374056144
3 7:0.671682705867
3 8:0.683561795359
4 5:0.227408924734
4 6:0.567284615239
4 7:0.829680729579
4 8:0.579653761261
5 6:0.489725544949
5 7:0.800795287734
5 8:0.531763018016
6 7:0.749610956708
6 8:0.683476502447
7 8:0.395583186477
</hsp>