sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2CKY-A35-A33
X
>3D2X-B35-B33
X
>3D2V-B35-B33
X
>2CKY-B35-B33
X
>3D2X-A35-A33
X
>3D2V-A35-A33
X
>3D2G-A35-A33
X
</seq>
<hsp>
0 1:0.765372420551
0 2:0.42705890245
0 3:0.444716981387
0 4:0.787246176946
0 5:0.806533799886
0 6:0.706372335223
1 2:0.622817592509
1 3:1.0
1 4:0.855149033939
1 5:0.87783657071
1 6:0.965959457874
2 3:0.496896568208
2 4:0.62871893996
2 5:0.528554078425
2 6:0.567243038207
3 4:0.794768264845
3 5:0.741149007339
3 6:0.622053032019
4 5:0.418322170517
4 6:0.470044691337
5 6:0.433151829293
</hsp>