sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A2406-A2352
X
>2QA4-02376-02322
X
>3U5D-12622-12568
X
>3U5H-52623-52569
X
>1EXD-B71-B69
X
>3U5H-52176-5418
X
</seq>
<hsp>
0 1:0.674053847861
0 2:0.608345774518
0 3:0.706137595383
0 4:0.575653302615
0 5:0.604615753856
1 2:0.413502828165
1 3:0.508980501868
1 4:0.999998612708
1 5:0.712447430559
2 3:0.181119314527
2 4:0.852895404209
2 5:0.65831269803
3 4:0.863688444799
3 5:0.688493832186
4 5:0.505053141082
</hsp>