sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3D2G-B50-B48
X
>3D2V-B50-B48
X
>3D2X-B50-B48
X
>3D2G-A50-A48
X
>2HOJ-A50-A48
X
>3D2X-A50-A48
X
>3D2V-A50-A48
X
>2CKY-A50-A48
X
>2GDI-X53-X51
X
>2HOL-A50-A48
X
</seq>
<hsp>
0 1:0.280614249335
0 2:0.480860935202
0 3:0.530476846157
0 4:0.937631024412
0 5:0.371410350266
0 6:0.461133654273
0 7:0.468038811002
0 8:0.903626819596
0 9:0.896225482724
1 2:0.299236571768
1 3:0.385438961937
1 4:0.79636780633
1 5:0.252839329166
1 6:0.25239333591
1 7:0.474926688732
1 8:0.751542374899
1 9:0.764608643107
2 3:0.564355907672
2 4:0.764059919935
2 5:0.493448621497
2 6:0.397116668955
2 7:0.526217177218
2 8:0.819422730656
2 9:0.905862780291
3 4:1.0
3 5:0.347980847065
3 6:0.422358183185
3 7:0.76101346547
3 8:0.74332984684
3 9:0.681074345472
4 5:0.83066660739
4 6:0.614507624341
4 7:0.957478685333
4 8:0.661970777751
4 9:0.854764320393
5 6:0.254434796157
5 7:0.553330506375
5 8:0.617437444834
5 9:0.566918313084
6 7:0.586343920373
6 8:0.53417252751
6 9:0.57620467206
7 8:0.968291998818
7 9:0.977101195006
8 9:0.2837496954
</hsp>