sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A933-A886
X
>3F1F-A933-A886
X
>3OH7-A915-A874
X
>2J01-A915-A874
X
>3G9C-S84-S85
X
>3OHJ-A450-A162
X
>3OHK-A450-A162
X
>2ZJR-X369-X157
X
>3OI1-A450-A162
X
>3R8S-A434-A180
X
</seq>
<hsp>
0 1:0.0237760341404
0 2:0.30631461228
0 3:0.210728238166
0 4:0.627919734134
0 5:1.0
0 6:0.995113186625
0 7:0.866611962006
0 8:0.95381167583
0 9:0.895013758515
1 2:0.306643249401
1 3:0.21162853752
1 4:0.618724966912
1 5:0.999172725911
1 6:0.994744072465
1 7:0.862854792705
1 8:0.953462984828
1 9:0.894245298636
2 3:0.206348519084
2 4:0.741943251318
2 5:0.893082089916
2 6:0.888370263928
2 7:0.727912428295
2 8:0.83594733028
2 9:0.845380912528
3 4:0.676913622493
3 5:0.915596960368
3 6:0.907544349205
3 7:0.778162832818
3 8:0.860516857519
3 9:0.813268563308
4 5:0.878159831491
4 6:0.889463848321
4 7:0.814870305352
4 8:0.92057334662
4 9:0.776801197522
5 6:0.0517364106967
5 7:0.343673993317
5 8:0.160032109978
5 9:0.365937234182
6 7:0.369291212355
6 8:0.130618185189
6 9:0.341717256992
7 8:0.373409742824
7 9:0.550931099386
8 9:0.352713263146
</hsp>